Showcase

Time 2022-07-19 20:28:41

Web Name: Showcase

WebSite: http://www.microreact.org

ID:253174

Keywords:

Showcase

Description:

Open data visualization and sharing for genomic epidemiology

In partnership with

Tracing the spread of carbapenem-resistant Klebsiella pneumoniae

David S et al. 2019.

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread. Nature Microbiology 2058-5276. (doi:10.1038/s41564-019-0492-8)

https://www.nature.com/articles/s41564-019-0492-8

SARS-CoV-2 in the UK

COG-UK Consortium

Continuous evaluation of the lineages circulating in the UK
(updated weekly)

https://www.cogconsortium.uk/data/

Streptococcus pneumoniae PMEN2

Croucher NJ et al. 2014.

Variable recombination dynamics during the emergence, transmission and 'disarming' of a multidrug-resistant pneumococcal clone. BMC Biology 12:49

http://www.ncbi.nlm.nih.gov/pubmed/24957517

Global Distribution of SARS-CoV-2

COG-UK Consortium

Continuous evaluation of the lineages circulating around the globe.
(updated weekly)

https://www.cogconsortium.uk/data/

West African Ebola epidemic (2013-2016)

Dudas G. et al. 2017.

Phylogeographic reconstruction of the West African Ebola epidemic based 1610 complete genomes. Nature 1476-4687 (doi:10.1038/nature22040).

http://www.nature.com/nature/journal/vaop/ncurrent/full/nature22040.html

Zika virus in the Americas

Rodrigues Faria, N. et al. 2016.

Zika virus in the Americas: Early epidemiological and genetic findings. Science 352(6283):345-9.

http://science.sciencemag.org/content/352/6283/345.article-info

Y-chromosome Human Phylogeny

Hallast P. et al. 2015.

The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades. Mol Biol Evol 32(3):661

http://www.ncbi.nlm.nih.gov/pubmed/25468874

Vibrio cholerae

Mutreja A. et al. 2011.

Evidence for several waves of global transmission in the seventh cholera pandemic. Nature 477:462

http://www.ncbi.nlm.nih.gov/pubmed/21866102

Staphylococcus aureus ST239

Harris S. et al. 2010.

Evolution of MRSA during hospital transmission and intercontinental spread.

http://www.ncbi.nlm.nih.gov/pubmed/20093474

Yersinia enterocolitica

Reuter S. et al. 2015.

Directional gene flow and ecological separation in Yersinia enterocolitica. M Gen 1(3): doi:10.1099/mgen.0.000030.

http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000030

Salmonella Typhi

Wong V. et al. 2015.

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intra-continental transmission events. Nature Genetics 47(6):632

http://www.ncbi.nlm.nih.gov/pubmed/25961941

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