PRIMe: Platform for RIKEN Metabolomics

Time 2020-12-06 18:04:17

Web Name: PRIMe: Platform for RIKEN Metabolomics

WebSite: http://prime.psc.riken.jp

ID:125687

Keywords:

Platform,PRIMe,for,

Description:

PRIMe ,the Platform for RIKEN Metabolomics, is a Web-based service for metabolomics and transcriptomics as systems for understanding life. Latest News 2020-12-04 [LC-MS] AtMetExpress, LC-MS Branch and MS/MS spectral tag (MS2T) viewer has closed due to end of support. 2020-11-30 [ReSpect for Phytochemicals][HIFI][MetBoard][PRIMeLink] Stop for 2-3 weeks for server maintenance. 2020-11-30 [MeKO] MeKO has closed due to end of support. Change log April 13, 2020 CompMS Advances in computational mass spectrometry for omics data science deepen the understanding of metabolisms. (Pages for MS-DIAL, MS-FINDER etc.) April 12, 2019 RIKEN Plant Metabolonome MetaDatabase RIKEN Plant Metabolome MetaDatabase (PMM) is an integrated plant metabolome data repository based on the semantic web. June 27, 2018 PlaSMA Plant Specialized Metabolome Annotation. January 16, 2017 DROP Met Contains various datasets obtained from mass spectrometer-based metabolome analyses. March 5, 2020 RIKEN LIPIDOMICS Lipidomics results in our lipoquality project using MS-DIAL 4. November 11, 2013 ReSpect for Phytochemicals A collection of literature and in-house MSn spectra data for the plant metabolomics research. Mar 31, 2017 HIFI Heteroatom-containing Ion Finder (HIFI) is a tool for Liquid chromatography Fourier transfer ion cyclotron resonance-mass spectrometry. January 24, 2014 MetBoard MetBoard provides information of standard compounds which can be divided from providers for collaboration work. October 31, 2012 PRIMeLink Innovative integration of the databases in PRIMe and bi-directionalsearchable function from the gene or metabolite perspective. November 15, 2007 KNApSAcK A comprehensive species-metabolite relationships database. August 30,2006 Standard Spectrum Search A database of the standardized spectra of a range of compounds based on NMR chemical shifts and on GC and LC mass spectrometer. December 30,2005 Simple BL-SOM An application for creating a batch-learning self-organizing map. Sakurai et al. (2013) PRIMe Update: Innovative Content for Plant Metabolomics and Integration of Gene Expression and Metabolite Accumulation.Plant Cell Physiol. 54:e5 [PubMed] Akiyama et al. (2008) PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol. 8, 0027. /isb/2008/08/0027/ [PubMed] [LC-MS] AtMetExpress, LC-MS Branch and MS/MS spectral tag (MS2T) viewer has closed due to end of support. 2020-11-30 [MeKO] MeKO has closed due to end of support. 2020-11-20 [DROP Met] Data was added. 2020-04-13 [CompMS] The Computational metabolomics has been redesigned. 2020-03-05 [RIKEN LIPIDOMICS] Newly opened. 2019-07-11 [DROP Met] Data was added. 2019-04-15 [DROP Met] Data was added. 2019-04-12 [RIKEN Plant Metabolonome MetaDatabase] Newly opened. 2019-04-01 [PASMet] PASMet has closed due to end of support. 2018-06-27 [PlaSMA] Newly opened. 2017-01-16 [DROP Met] Data was added. 2017-01-06 [DROP Met] Data was added. 2015-06-02 [PASMet] Newly opened. 2014-10-08 The directory [Targeted and Non-targeted analysis software] was moved to newly opened [Standalone software] section. 2014-06-19 [DROP Met] Data was added. 2014-01-24 [MetBoard] Newly opened. 2013-09-26 [DROP Met] Data was added. 2013-07-01 [DROP Met] Data was added. 2013-04-25 [DROP Met] Data was added. 2013-04-01 [Targeted and Non-targeted analysis software] Newly opened. 2013-02-15 [DROP Met] Data was added. 2013-02-13 [DROP Met] Data was added. 2012-10-31 [PRIMeLink] Newly opened. 2012-09-14 [SpinAssign] Added more than 510 NMR spectra for Methanol/HEPES extracted samples. 2012-08-10 [MeKO] Newly opened. 2011-08-10 [AtMetExpress] New content available. 2010-09-10 [ReSpect] Newly opened. 2009-04-07 [MS2T] Newly opened. 2008-06-26 [Standard spectrum search] Dramatically changed standard data, ex. 300% increase of NMR data, and version up of current status metabolic map. [SpinAssign] Modified example input data to experimental plant extract, measured by our laboratory. Searching total of more than 500 of 13C-HSQC cross peaks with our new NMR data base. 2006-12-29 [SpinAssign] Released a stable service. [Standard Spectrum Search] Released a stable service. [Cluster Cutting] Changed the service name. [Correlated Gene Search] Changed the service name. 2006-08-30 [Site Map] Added a page. [Cluster Extract] Updated Using Cluster Extract [Cluster Extract] Revised the cutting program. [Coexpression Gene Search] Released a stable service. [Coexpression Gene Search] Updated Using Coexpression Gene Search 2006-08-17 [Coexpression Gene Search] Added a Biolayout-compatible output format and revised the Pajek-compatible output format.

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PRIMe: Platform for RIKEN Metabolomics

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