Virus Pathogen Database and Analysis Resource (ViPR) - Genome database

Time 2021-01-05 14:08:52

Web Name: Virus Pathogen Database and Analysis Resource (ViPR) - Genome database

WebSite: http://www.viprbrc.org

ID:157407

Keywords:

and,Analysis,Resource,Virus,genome,database,search,protein,bioinformatics,NIAID,

Description:

Click on icon of family or species of interest. Click here to to view all families and species in list format. Don't know family of species? Virus Pathogen Database and Analysis Resource (ViPR) - Genome database with visualization and analysis tools ViPR uses PhyML (Guindon and Gascuel, 2003) and offers multiple evolutionary models to infer phylogenies. Decoration options let you color tree leaves by metadata. Export image and legend, or download trees as Newick or PhyloXml files for other viewing software. Key Highlights: Quick Tree produces an accurate topology for > 1,000 sequences. Custom Tree lets you choose an evolutionary model and parameter values. ModelCompare (Custom Tree) suggests an evolutionary model to best fit the data. Specify metadata for the leaves (strain name, etc.)Mature viral protein products resulting from protease- and self-cleavage of the polyprotein are displayed according to their location in the genome and the polyprotein. Key Highlights: Display location of mature peptide Access additional information relating to the mature peptide The ViPR Workbench allows users to save 'working sets' of sequences, searches and analysis results between web sessions in their own private workspace. Users can share working sets or analysis results with collaborators. Key Highlights: Save and organize working sets of sequences, analysis results and search criteria Visualize saved analysis results Share working sets and analysis results with others Upload personal sequences and combine with existing working sets Visualize protein structures in 3D. Users can highlight experimentally determined epitopes on the structure. Key Highlights: Visualize protein structure in 3D Highlight sequence features (epitopes, etc.) on the structure Download highlighted protein structure imageCompute and visualize multiple sequence alignments together with derived consensus sequence and conservation score within ViPR. Perform custom alignments using the MUSCLE algorithm. Alignments can be saved to the ViPR WorkBench or downloaded in various formats. Key Highlights: Click on family below or use Virus Taxonomy Browser at bottom of this page to select family or species of interest. Or click here to view taxonomy in list format. For influenza virus data and tools, use the Influenza Research Database, a separate resource created by the ViPR team. The ViPR team periodically sends out an email newsletter highlighting new features and other site functionality. Click here to sign-up for the newsletter. This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to law enforcement officials.This project is funded by the U.S. National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract No. 75N93019C00076. This is a collaboration between the University of Chicago and J. Craig Venter Institute. Virus images courtesy of CDC Public Health Image Library, Wellcome Images, U.S. Department of Veterans Affairs, Science of the Invisible and ViralZone, Swiss Institute of Bioinformatics.

TAGS:and Analysis Resource Virus genome database search protein bioinformatics NIAID 

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Searchable database of virus genomes with visualization and analysis tools.

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