BioPAX (on Github)
Time 2021-11-22 08:22:16Web Name: BioPAX (on Github)
WebSite: http://www.biopax.org
ID:245209
Keywords:
BioPAX,on,Github,Description:
keywords: description:Biological Pathway Exchange (BioPAX) is a standard language that aims to enable integration, exchange, visualization and analysis of biological pathway data. Specifically, BioPAX supports data exchange between pathway data groups and thus reduces the complexity of interchange between data formats by providing an accepted standard format for pathway data. It is an open and collaborative effort by the community of researchers, software developers, and institutions. BioPAX is defined in OWL DL and is represented in the RDF/XML format. For more details, see Demir E et al. 2010. The BioPAX community standard for pathway data sharing, Nature Biotechnology. 28(9).
Links: BioPAX ontology and documentation releases Specification development Archive and downloads Google group Wiki (archive) BioPAX validator BioPAX @ COMBINE View BioPAX via WebProtege(requires an account) OWLdoc WebVOWL "Hello World" example:?xml version="1.0" encoding="UTF-8"? rdf:RDF xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xml:base="" owl:Ontology rdf:about="" owl:imports rdf:resource="http://www.biopax.org/release/biopax-level3.owl#" / /owl:Ontology bp:Protein rdf:about="http://my.example.com/biopax#HelloWorld" bp:displayName rdf:datatype="http://www.w3.org/2001/XMLSchema#string"Hello World!/bp:displayName /bp:Protein /rdf:RDF
More examples examples
Scientific Advisory BoardGary Bader, University of Toronto Peter D'Eustachio, New York University Henning Hermjakob, European Bioinformatics Institute Nicolas LeNovere, European Bioinformatics Institute Peter Karp, SRI International Chris Sander Harvard University
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